Setup Guide • grafzahl

This is a quick setup guide for different situations.

grafzahl requires a Python environment. By default, grafzahl assumes you would like to use a miniconda-based Python environment. It can be installed by using the provided setup_grafzahl() function.

require(grafzahl)
setup_grafzahl(cuda = TRUE) # FALSE if you don't have CUDA compatible GPUs

## Use grafzahl right away, an example
model <- grafzahl(unciviltweets, model_type = "bertweet", model_name = "vinai/bertweet-base")

There are other setup options.

Google Colab and similar services

In order to use grafzahl on Google Colab, please choose the R-based Runtime (Runtime > Change Runtime Type > Runtime Type: R). You might also want to choose a hardware accelerator, e.g. T4 GPU.

In this case, you need to enable the non-Conda mode, i.e. use_nonconda(). By default, it will also install the required Python packages.

install.packages("grafzahl")
use_nonconda(install = TRUE, check = TRUE) # default

## Use grafzahl right away, an example
model <- grafzahl(unciviltweets, model_type = "bertweet", model_name = "vinai/bertweet-base")

Default Python

If you don’t want to use any conda configuration on your local machine, you can just install the Python packages simpletransformers and emoji.

python3 -m pip install simpletransformers emoji

And then

require(grafzahl)
use_nonconda(install = FALSE, check = TRUE) ## what it does is just: options("grafzahl.nonconda" = TRUE)

## Use grafzahl right away, an example
model <- grafzahl(unciviltweets, model_type = "bertweet", model_name = "vinai/bertweet-base")

Use conda, but not the grafzahl’s default

Suppose you have installed a conda installation elsewhere. Please note the base path of your conda installation.

conda env list

Create a new conda environment with the default grafzahl environment name

With Cuda

conda env create -n grafzahl_condaenv_cuda
conda activate grafzahl_condaenv_cuda
conda install -n grafzahl_condaenv_cuda python pip pytorch pytorch-cuda cudatoolkit -c pytorch -c nvidia
python -m pip install simpletransformers emoji
conda deactivate

## Test the CUDA installation with

Rscript -e "grafzahl::detect_cuda()"

Without Cuda

conda env create -n grafzahl_condaenv
conda activate grafzahl_condaenv
conda install -n grafzahl_condaenv python pip pytorch -c pytorch
python -m pip install simpletransformers emoji
conda deactivate

In R, you have to change to default conda path

## suppose /home/yourname/miniconda is the base path of your conda installation
require(grafzahl)
Sys.setenv(GRAFZAHL_MINICONDA_PATH = "/home/yourname/miniconda")

## Use grafzahl right away, an example
model <- grafzahl(unciviltweets, model_type = "bertweet", model_name = "vinai/bertweet-base")

Explanation: Important options and envvars

There are two important options and envvars. options("grafzahl.nonconda") controls whether to use the non-conda mode. Envvar GRAFZAHL_MINICONDA_PATH controls the base path of the conda installation. If it is "" (the default), reticulate::miniconda_path() is used as the base path.